Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI 6

1. AI-driven drug repositioning: A diffusion model approach on knowledge graphs

Erkantarci B., Şen T. Ü., Bakal M. G.
Journal of Computational Science , vol.97, pp.102862, 2026 (SCI-Expanded) Sustainable Development

2. Combining N-grams and graph convolution for text classification

Şen T. Ü., Yakit M. C., Gümüş M. S., Abar O., Bakal M. G.
Applied Soft Computing , vol.175, pp.113092, 2025 (SCI-Expanded) Sustainable Development identifier

3. Enhancing Sentiment Analysis in Stock Market Tweets Through BERT-Based Knowledge Transfer

Cicekyurt E., Bakal M. G.
Computational Economics , vol.65, pp.1-23, 2025 (SCI-Expanded) Sustainable Development identifier

4. Beyond visual cues: Emotion recognition in images with text-aware fusion

Sungur K. S., Bakal G.
Displays , vol.87, no.102958, pp.1-8, 2025 (SCI-Expanded) Sustainable Development identifier

5. Building a challenging medical dataset for comparative evaluation of classifier capabilities

Bozkurt B., Coskun K., Bakal G.
Computers in Biology and Medicine , vol.178, pp.1-8, 2024 (SCI-Expanded) Sustainable Development identifier identifier

6. Exploiting semantic patterns over biomedical knowledge graphs for predicting treatment and causative relations

Bakal G., Talari P., Kakani E., Kavuluru R.
JOURNAL OF BIOMEDICAL INFORMATICS , vol.82, pp.189-199, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier
Articles Published in Other Journals 7

1. Generating informative chest X-ray captions with LSTM architecture

Güzel Ö. F., Tanrıverdi H., Bakal M. G.
Journal of Innovative Engineering and Natural Science , vol.5, no.2, pp.477-489, 2025 (Peer-Reviewed Journal) Sustainable Development identifier

2. Enhancing Deep Learning Performance Through a Genetic Algorithm-Enhanced Approach: Focusing on Lstm

Şen T. Ü., Bakal M. G.
Kahramanmaras Sutcu Imam University Journal of Engineering Sciences , vol.27, pp.1350-1360, 2024 (Peer-Reviewed Journal) Sustainable Development identifier

3. An empirical study of sentiment analysis utilizing machine learning and deep learning algorithms

Erkantarci B., Bakal M. G.
Journal of Computational Social Science , vol.6, pp.1-17, 2024 (ESCI) Sustainable Development identifier

4. Document Classification with Contextually Enriched Word Embeddings

Mahmood R. S., Bakal M. G., Akbaş A.
Balkan Journal of Electrical and Computer Engineering , vol.12, no.1, pp.90-97, 2024 (Peer-Reviewed Journal) Sustainable Development identifier

5. Machine Learning based Network Intrusion Detection with Hybrid Frequent Item Set Mining

Firat M., Bakal M. G., Akbaş A.
Journal of Polytechnic , vol.1, no.1, pp.1, 2024 (ESCI) Sustainable Development identifier

6. Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset.

Bakal G., Kilicoglu H., Kavuluru R.
AMIA ... Annual Symposium proceedings. AMIA Symposium , vol.2019, pp.238-247, 2020 (Peer-Reviewed Journal) identifier identifier

7. Predicting Treatment Relations with Semantic Patterns over Biomedical Knowledge Graphs.

Bakal G., Kavuluru R.
Mining intelligence and knowledge exploration : third International Conference, MIKE 2015, Hyderabad, India, December 9-11, 2015. Proceeedings. MIKE (Conference) (3rd : 2015 : Hyderabad, India) , vol.9468, pp.586-596, 2015 (Peer-Reviewed Journal) Creative Commons License identifier identifier
Papers Presented at Peer-Reviewed Scientific Conferences 20

1. A Data-Driven Framework for Predicting Flight Arrival Delays Using Integrated Aviation and Meteorological Data

Akyuz M. S., Bakal M. G.
2025 10th International Conference on Computer Science and Engineering (UBMK), İstanbul, Turkey, 17 - 21 September 2025, pp.1543-1547, (Full Text) Sustainable Development

2. An Integrated Approach for Asteroid Impact Prediction and Trajectory Visualization

Erdogan E. B., Bakal M. G.
The 2025 conference on Big Data from Space (BiDS'25), Riga, Latvia, 29 September - 03 October 2025, pp.173-176, (Summary Text) Sustainable Development identifier

3. Multi-Method Text Summarization: Evaluating Extractive and BART-Based Approaches on CNN/Daily Mail

İnal Y., Bakal M. G., Eşit M.
2025 9th International Symposium on Innovative Approaches in Smart Technologies (ISAS), Gaziantep, Turkey, 27 - 28 June 2025, pp.1-7, (Full Text) Sustainable Development

4. TransFusionKG: Integrating TransE and Graph Denoising Transformers for Structured Drug Repositioning

Erkantarci B., Bakal M. G.
Intelligent Systems for Molecular Biology (ISMB) & European Conference on Computational Biology , Liverpool, England, 20 - 24 July 2025, pp.648-649, (Summary Text) Sustainable Development

5. A Comprehensive Investigation into Strip Steel Defect Detection using Traditional Machine Learning and Deep Learning Models

Erkantarcı B., Kurban R., Bakal M. G., Köse A.
2025 7th International Congress on Human-Computer Interaction, Optimization and Robotic Applications (ICHORA), Ankara, Turkey, 23 - 24 May 2025, pp.1-4, (Full Text) Sustainable Development

6. NLP-Driven Fake News Detection: A Machine Learning Perspective

Çoban M. K., Bakal M. G.
2025 7th International Congress on Human-Computer Interaction, Optimization and Robotic Applications (ICHORA), Ankara, Turkey, 23 - 24 May 2025, pp.1-6, (Full Text) Sustainable Development

7. Text Classification Experiments on Contextual Graphs Built by N-Gram Series

Şen T. Ü., Yakıt M. C., Gümüş M. S., Abar O., Bakal M. G.
4'th International Conference on Intelligent Systems and Pattern Recognition, İstanbul, Turkey, 26 - 28 June 2024, pp.312-326 Sustainable Development

8. Biomedical Embedding Transitions for Enhanced Computational Drug Repositioning

Erkantarci B., Bakal M. G.
17th The International Symposium on Health Informatics and Bioinformatics, İstanbul, Turkey, 18 - 20 December 2024, pp.1 Sustainable Development

9. Words Speak Louder Than Actions: Decoding Emotions Through NLP

Paksoy M., Bakal M. G.
2024 9th International Conference on Computer Science and Engineering (UBMK), Antalya, Turkey, 26 - 28 October 2024, pp.1-5, (Full Text) Sustainable Development identifier

10. From Traditional to Deep: Evaluating Sentiment Analysis Models on a Large-Scale Tweet Dataset

Mammadov A., Bakal M. G.
2024 9th International Conference on Computer Science and Engineering (UBMK), Antalya, Turkey, 26 - 28 October 2024, pp.1-5, (Full Text) Sustainable Development identifier

11. Drug Repositioning via Entity Transformation in Biomedical Knowledge Systems

Erkantarcı B., Bakal M. G.
3rd INTERNATIONAL CONGRESS of ELECTRICAL and COMPUTER ENGINEERING, Balıkesir, Turkey, 27 - 30 November 2024, pp.177-191, (Full Text) Sustainable Development

12. Improving Salary Offer Processes With Classification Based Machine Learning Models

Kaya R., Saatçi M., Bakal G.
2024 8th International Artificial Intelligence and Data Processing Symposium (IDAP), Malatya, Turkey, 21 - 22 September 2024, pp.1-7, (Full Text) Sustainable Development identifier

13. Graph-based Biomedical Knowledge Discovery Çizge tabanlı Biyomedikal Bilgi Keşfi

Altuner O., Bakır-Gungor B., Bakal G.
32nd IEEE Conference on Signal Processing and Communications Applications, SIU 2024, Mersin, Turkey, 15 - 18 May 2024 identifier

14. A Transfer Learning Application on the Reliability of Psychological Drugs' Comments

Şen T. Ü., Bakal G.
2023 International Conference on Smart Applications, Communications and Networking (SmartNets), İstanbul, Turkey, 25 - 27 July 2023, pp.1-6, (Full Text) identifier

15. A Computational Drug Repositioning Effort using Patients’ Reviews Dataset

Akkaya A., Bakal G.
2023 International Conference on Smart Applications, Communications and Networking (SmartNets), İstanbul, Turkey, 25 - 27 July 2023, pp.1-6, (Full Text) identifier

16. A Comparative Analysis on Medical Article Classification Using Text Mining & Machine Learning Algorithms

Kolukisa B., Dedetürk B. K., Adanur Dedetürk B., Gülşen A., Bakal M. G.
2021 6th International Conference on Computer Science and Engineering (UBMK), Ankara, Turkey, 15 - 17 September 2021, pp.360-365, (Full Text)

17. On Comparative Classification of Relevant Covid-19 Tweets

Bakal M. G., Abar O.
2021 6th International Conference on Computer Science and Engineering (UBMK), Ankara, Turkey, 15 - 17 September 2021, pp.287-291, (Full Text) Sustainable Development

18. Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset.

Bakal M. G., Kılıçoğlu H., Kavuluru R.
AMIA ... Annual Symposium proceedings. AMIA Symposium, Washington, United States Of America, 16 - 20 November 2019, vol.2019, pp.238-247, (Full Text) Sustainable Development

19. On the Predictive Potential of Graph Patterns for Biomedical Relation Extraction

BAKAL M. G., Wallace s., kavuluru r.
AMIA 2016 ANNUAL SYMPOSIUM, Chicago, IL, United States Of America, 12 - 16 November 2016

20. On Quantifying Diffusion of Health Information on Twitter

Bakal G., Kavuluru R.
4th IEEE EMBS International Conference on Biomedical and Health Informatics (BHI), Florida, United States Of America, 16 - 19 February 2017, pp.485-488 Creative Commons License identifier identifier
Books 3

1. A Sentiment Analysis Example Using Bert Model

Öztürk I., Bakal M. G.
in: Classification Models in Data Mining and Applied Examples in R language, Ömer Faruk Rençber, Editor, Nobel Yayın Dağıtım, Ankara, pp.187-217, 2022 Sustainable Development

2. Classification Approach with Hybrid Modelling

Bakal M. G., Öztürk I.
in: Classification Models in Data Mining and Applied Examples in R language, Ömer Faruk Rençber, Editor, Nobel Yayın Dağıtım, Ankara, pp.219-236, 2022 Sustainable Development

3. On Clustering Covid-19 Tweets with Text Min- ing Perspective

Bakal M. G., Abar H., Öztürk İ., Abar O., Abar O. (Editor)
in: Text Mining Applications Using Real-World Data in Python, Orhan Abar, Editor, Nobel Yayınevi, Ankara, pp.1-22, 2021
Metrics

Publication

36

Publication (WoS)

2

Publication (Scopus)

15

Citation (WoS)

80

H-Index (WoS)

4

Citation (Scopus)

143

H-Index (Scopus)

7

Citation (Scholar)

239

H-Index (Scholar)

9

Citation (Sobiad)

4

H-Index (Sobiad)

1

Project

1

Thesis Advisory

2
UN Sustainable Development Goals