Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI 18

1. Cellulose-based hydrogel matrix enhances antimicrobial and biofilm-inhibitory responses of palatal mesenchymal stem cells

Bicer M., Sener F., Öztürk E., FİDAN Ö.
3 Biotech , vol.16, no.6, 2026 (SCI-Expanded) identifier identifier

2. Pangenome Analysis and Genome-Guided Probiotic Evaluation of Cyclic Dipeptides Producing Levilactobacillus brevis DY55bre Strain from a Lactic Acid Fermented Shalgam to Assess Its Metabolic, Probiotic Potentials, and Cytotoxic Effects on Colorectal Cancer Cells

YETİMAN A. E., Horzum M., Kanbur E., ÇADIR M., BAHAR D., Gürbüz Ş., et al.
Probiotics and Antimicrobial Proteins , vol.18, no.3, pp.4540-4568, 2026 (SCI-Expanded) identifier identifier

3. Antifungal Efficacy of 3D-Cultured Palatal Mesenchymal Stem Cells and Their Secreted Factors against Candida albicans.

Bicer M., Öztürk E., Sener F., Hakki S. S., Fidan Ö.
ACS infectious diseases , vol.11, pp.2894-2906, 2025 (SCI-Expanded) Sustainable Development identifier identifier

4. Biochemical Characterization and Genome Analysis of Pseudomonas loganensis sp. nov., a Novel Endophytic Bacterium

Karaman M. Z., YETİMAN A. E., Zhan J., FİDAN Ö.
MicrobiologyOpen , vol.14, no.4, 2025 (SCI-Expanded) identifier identifier

5. Discovery of a C-S lyase inhibitor for the prevention of human body malodor formation: tannic acid inhibits the thioalcohol production in Staphylococcus hominis

Fidan Ö., Karipcin A. D., Köse A. H., Anaz A., Demirsoy B. N., Arslansoy N., et al.
International Microbiology , vol.28, no.3, pp.411-422, 2025 (SCI-Expanded) identifier identifier

6. Can mesenchymal stem/stromal cells and their secretomes combat bacterial persisters?

Bicer M., FİDAN Ö.
World Journal of Microbiology and Biotechnology , vol.39, no.10, 2023 (SCI-Expanded) Sustainable Development identifier identifier

7. Inhibition of pathologic immunoglobulin E in food allergy by EBF-2 and active compound berberine associated with immunometabolism regulation

Yang N., Maskey A. R., Srivastava K., Kim M., Wang Z., Musa I., et al.
Frontiers in Immunology , vol.14, 2023 (SCI-Expanded) identifier identifier

8. In Silico Analysis of Bacteriocins from Lactic Acid Bacteria Against SARS-CoV-2

Erol I., Kotil S. E., FİDAN Ö., YETİMAN A. E., Durdagi S., ORTAKCI F.
PROBIOTICS AND ANTIMICROBIAL PROTEINS , vol.15, no.1, pp.17-29, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

9. Discovery of adapalene and dihydrotachysterol as antiviral agents for the Omicron variant of SARS-CoV-2 through computational drug repurposing

FİDAN Ö., Mujwar S., Kciuk M.
MOLECULAR DIVERSITY , vol.27, no.1, pp.463-475, 2023 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

10. Berberine-containing natural-medicine with boiled peanut-OIT induces sustained peanut-tolerance associated with distinct microbiota signature

Srivastava K., Cao M., FİDAN Ö., Shi Y., Yang N., Nowak-Wegrzyn A., et al.
Frontiers in Immunology , vol.14, 2023 (SCI-Expanded) Creative Commons License identifier identifier

11. Editorial: Microbial production of medicinally important agents

Zeng J., Zhan J., Qiao X., FİDAN Ö.
Frontiers in Microbiology , vol.14, 2023 (SCI-Expanded) identifier identifier

12. In silico evaluation of food-derived carotenoids against SARS-CoV-2 drug targets: Crocin is a promising dietary supplement candidate for COVID-19

Mujwar S., Sun L., FİDAN Ö.
JOURNAL OF FOOD BIOCHEMISTRY , vol.46, no.9, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

13. Biosynthesis of Novel Naphthoquinone Derivatives in the Commonly-used Chassis Cells Saccharomyces cerevisiae and Escherichia coli

Wu W., Wang S., Zhang H., Guo W., Lu H., Xu H., et al.
Applied Biochemistry and Microbiology , vol.57, 2021 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier

14. Discovery and engineering of an endophytic Pseudomonas strain from Taxus chinensis for efficient production of zeaxanthin diglucosided

Fidan Ö., Zhan J.
JOURNAL OF BIOLOGICAL ENGINEERING , vol.13, no.1, 2019 (SCI-Expanded) identifier identifier identifier

15. Improved production of antifungal angucycline Sch47554 by manipulating three regulatory genes in Streptomyces sp. SCC-2136

Fidan Ö., Yan R., Zhu D., Zhan J.
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY , vol.66, no.4, pp.517-526, 2019 (SCI-Expanded) identifier identifier identifier

16. Identification of new glutamate decarboxylases from Streptomyces for efficient production of -aminobutyric acid in engineered Escherichia coli

Yuan H., Wang H., Fidan Ö., Qin Y., Xiao G., Zhan J.
JOURNAL OF BIOLOGICAL ENGINEERING , vol.13, 2019 (SCI-Expanded) Creative Commons License identifier identifier identifier

17. New Insights into the Glycosylation Steps in the Biosynthesis of Sch47554 and Sch47555

Fidan Ö., Yan R., Gladstone G., Zhou T., Zhu D., Zhan J.
CHEMBIOCHEM , vol.19, no.13, pp.1424-1432, 2018 (SCI-Expanded) Creative Commons License identifier identifier identifier

18. Recent advances in engineering yeast for pharmaceutical protein production

Fidan Ö., Zhan J.
RSC ADVANCES , vol.5, no.105, pp.86665-86674, 2015 (SCI-Expanded) identifier identifier
Articles Published in Other Journals 4

1. Draft genome of carotenoid-producing endophytic Pseudomonas sp. 102515 from Taxus chinensis

Fidan O.
Microbiology Resource Announcements , vol.13, no.6, 2024 (ESCI) identifier identifier

2. In silico Evaluation of the Potential of Natural Products from Chili Pepper as Antiviral Agents Against Dna-Directed Rna Polymerase of the Monkeypox Virus

Fidan O., MUJWAR S.
Bitlis Eren Üniversitesi Fen Bilimleri Dergisi , vol.13, no.1, pp.277-291, 2024 (Peer-Reviewed Journal) Creative Commons License identifier

3. Investigation of Antiviral Potential of Food Carotenoids and Apocarotenoids against RNA-dependent RNA Polymerase of Hepatitis C Virus

Fidan O.
Bitlis Eren Üniversitesi Fen Bilimleri Dergisi , vol.11, no.3, pp.931-942, 2022 (Peer-Reviewed Journal) Sustainable Development identifier

4. Engineered production of bioactive natural products from medicinal plants

FİDAN Ö., Ren J., Zhan J.
WORLD JOURNAL OF TRADITIONAL CHINESE MEDICINE , vol.8, no.1, pp.59-76, 2022 (ESCI) identifier identifier
Papers Presented at Peer-Reviewed Scientific Conferences 8

1. Microbial production of carotenoids in engineered endophytic Pseudomonas sp. 102515.

Fidan Ö., Arslansoy N.
6th Eurasia Biochemical Approaches & Technologies Congress (EBAT), Tokat, Turkey, 24 - 27 October 2024, pp.1

2. Biosynthesis of high value-added carotenoids by engineered microorganisms

Fidan Ö., Arslansoy N.
6th International Eurasian Conference on Biological and Chemical Sciences, Ankara, Turkey, 11 - 13 October 2023, pp.179 Sustainable Development

3. Enzymatic halogenation of flavonoids by a fungal flavin-dependent halogenase

Fidan Ö.
III. International Enzyme and Bioprocess Days, Tokat, Turkey, 9 - 11 September 2022, pp.1 Sustainable Development

4. Berberine-containing Natural Medicine Confers Sustained Peanut Tolerance Associated with Distinct Microbiota Signature

FİDAN Ö., Zhan J.
Annual Meeting of the American Academy of Allergy Asthma and Immunology, Philadelphia, United States Of America, 13 - 16 March 2020 Creative Commons License

5. The Roles of Three Regulatory Proteins in the Biosynthesis of Angucyclines Sch47554 and Sch47555

FİDAN Ö., Zhan J.
Institute of Biological Engineering (IBE) Annual Conference, 5 - 07 April 2018

6. Isolation of an endophytic carotenoid-producing Pseudomonas strain and functional analysis of the carotenoid biosynthetic genes

FİDAN Ö., Zhan J.
Institute of Biological Engineering (IBE) Annual Conference, 5 - 07 April 2018

7. Functional characterization of three glycosyltransferases involved in the biosynthesis of Sch47554 and Sch47555

FİDAN Ö., Yan R., Zhan J.
Institute of Biological Engineering (IBE) Annual Conference, 30 March - 01 April 2017

8. Vapor phase deposition of alkyl- and fluoro-silanes on nanoporous glass

FİDAN Ö., Britt D.
ACS 2014 Colloid Surface Science Symposium, 22 - 25 June 2014
Books 4

1. Carotenoids and Their Antioxidant Power

Arslansoy N., Fidan Ö.
in: The Power of Antioxidants - Unleashing Nature's Defense Against Oxidative Stress, Ana Novo Barros,Ana Cristina Santos Abraão, Editor, IntechOpen, London, pp.1-15, 2024 Sustainable Development

2. Molecular Farming for the Production of Recombinant Pharmaceutical Proteins in Plants

Fidan Ö., Secgin Z.
in: Applications of Plant Molecular Farming, Chittaranjan Kole,Anurag Chaurasia,Kathleen L. Hefferon,Jogeswar Panigrahi, Editor, Springer, London/Berlin , Singapore, pp.235-258, 2024 Sustainable Development

3. Microbial Production of Pharmaceutically Important Plant Natural Products

Fidan Ö.
in: Applications of Plant Molecular Farming, Chittaranjan Kole,Anurag Chaurasia,Kathleen L. Hefferon,Jogeswar Panigrahi, Editor, Springer, London/Berlin , Singapore, pp.487-513, 2024 Sustainable Development

4. Reconstitution of Medicinally Important Plant Natural Products in Microorganisms

FİDAN Ö., Zhan J.
in: Molecular Pharming: Applications, Challenges, and Emerging Areas, Kermode Allison R., Jiang Liwen, Editor, John Wiley Sons, Inc., Hoboken, NJ, pp.383-415, 2019
Metrics

Publication

35

Publication (WoS)

10

Publication (Scopus)

20

Citation (WoS)

59

H-Index (WoS)

2

Citation (Scopus)

247

H-Index (Scopus)

9

Citation (Scholar)

350

H-Index (Scholar)

9

Project

4
UN Sustainable Development Goals