Yayınlar & Eserler

Yayın Ağı
SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Network intrusion detection based on machine learning strategies: performance comparisons on imbalanced wired, wireless, and software-defined networking (SDN) network traffics

Hacılar H., Aydin Z., Gungor V. C.
Turkish Journal of Electrical Engineering and Computer Sciences , cilt.32, sa.4, ss.623-640, 2024 (SCI-Expanded) identifier

Improved classification of colorectal polyps on histopathological images with ensemble learning and stain normalization

Yengec-Tasdemir S. B., AYDIN Z., Akay E., Dogan S., YILMAZ B.
Computer Methods and Programs in Biomedicine , cilt.232, 2023 (SCI-Expanded) identifier identifier

IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility

GÖRMEZ Y., AYDIN Z.
IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.20, sa.2, ss.1104-1113, 2023 (SCI-Expanded) identifier identifier

Comparative analysis of machine learning approaches for predicting respiratory virus infection and symptom severity

IŞIK Y. E., AYDIN Z.
PeerJ , cilt.11, 2023 (SCI-Expanded) identifier identifier

Camera-based wildfire smoke detection for foggy environments

Tas M., Tas Y., Balki O., AYDIN Z., TAŞDEMİR K.
JOURNAL OF ELECTRONIC IMAGING , cilt.31, sa.5, 2022 (SCI-Expanded) identifier

Clinical and molecular evaluation of MEFV gene variants in the Turkish population: a study by the National Genetics Consortium

DÜNDAR M., FAHRİOGLU U., Yildiz S. H., Bakir-Gungor B., TEMEL Ş. G., AKIN H., et al.
FUNCTIONAL & INTEGRATIVE GENOMICS , cilt.22, sa.3, ss.291-315, 2022 (SCI-Expanded) identifier identifier identifier

The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behcet's Disease

IŞIK Y. E., GÖRMEZ Y., AYDIN Z., Bakir-Gungor B.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , cilt.19, sa.3, ss.1909-1918, 2022 (SCI-Expanded) identifier identifier identifier

A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization

Yan Y., Schaffter T., Bergquist T., Yu T., Prosser J., AYDIN Z., et al.
JAMA NETWORK OPEN , cilt.4, sa.10, 2021 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

IGPRED: Combination of convolutional neural and graph convolutional networks for protein secondary structure prediction

GÖRMEZ Y., Sabzekar M., AYDIN Z.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.89, sa.10, ss.1277-1288, 2021 (SCI-Expanded) identifier identifier identifier

A noise-aware feature selection approach for classification

Sabzekar M., AYDIN Z.
SOFT COMPUTING , cilt.25, sa.8, ss.6391-6400, 2021 (SCI-Expanded) identifier identifier

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge

Sieberts S. K., Schaff J., Duda M., Pataki B. A., Sun M., Snyder P., et al.
NPJ DIGITAL MEDICINE , cilt.4, sa.1, 2021 (SCI-Expanded) Creative Commons License identifier identifier identifier

Effect of interpolation on specular reflections in texture-based automatic colonic polyp detection

Kacmaz R. N., YILMAZ B., AYDIN Z.
INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY , cilt.31, sa.1, ss.327-335, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

3-State Protein Secondary Structure Prediction based on SCOPe Classes

Atasever S., AZGINOĞLU N., Erbay H., AYDIN Z.
BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY , cilt.64, 2021 (SCI-Expanded) Creative Commons License identifier identifier

A review of mammographic region of interest classification

Yengec Tasdemir S. B., TAŞDEMİR K., AYDIN Z.
WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY , cilt.10, sa.5, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

A deep learning approach with Bayesian optimization and ensemble classifiers for detecting denial of service attacks

Gormez Y., AYDIN Z., Karademir R., GÜNGÖR V. Ç.
INTERNATIONAL JOURNAL OF COMMUNICATION SYSTEMS , cilt.33, sa.11, 2020 (SCI-Expanded) identifier identifier

Lung cancer subtype differentiation from positron emission tomography images

AYYILDIZ O., AYDIN Z., YILMAZ B., KARAÇAVUŞ S., Senkaya K., İÇER S., et al.
TURKISH JOURNAL OF ELECTRICAL ENGINEERING AND COMPUTER SCIENCES , cilt.28, sa.1, ss.262-274, 2020 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier

Structural profile matrices for predicting structural properties of proteins

Azginoglu N., AYDIN Z., ÇELİK M.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.18, sa.4, 2020 (SCI-Expanded) identifier identifier identifier

Metabolic Imaging based Sub-Classification of Lung Cancer

Bicakci M., AYYILDIZ O., AYDIN Z., BAŞTÜRK A., Karacavus S., YILMAZ B.
IEEE Access , cilt.8, ss.218470-218476, 2020 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier

Sample Reduction Strategies for Protein Secondary Structure Prediction

Atasever S., AYDIN Z., Erbay H., Sabzekar M.
APPLIED SCIENCES-BASEL , cilt.9, sa.20, 2019 (SCI-Expanded) Creative Commons License identifier identifier

Developing structural profile matrices for protein secondary structure and solvent accessibility prediction

AYDIN Z., AZGINOĞLU N., Bilgin H. I., ÇELİK M.
BIOINFORMATICS , cilt.35, sa.20, ss.4004-4010, 2019 (SCI-Expanded) identifier identifier identifier

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

Fourati S., Taa A., Mahmoudian M., Burkhart J. G., Klen R., Henao R., et al.
NATURE COMMUNICATIONS , cilt.9, 2018 (SCI-Expanded) Creative Commons License identifier

Dimensionality reduction for protein secondary structure and solvent accesibility prediction

AYDIN Z., KAYNAR O., GÖRMEZ Y.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.16, sa.5, 2018 (SCI-Expanded) identifier

Protein beta-sheet prediction using an efficient dynamic programming algorithm

Sabzekar M., Naghibzadeh M., Eghdami M., AYDIN Z.
COMPUTATIONAL BIOLOGY AND CHEMISTRY , cilt.70, ss.142-155, 2017 (SCI-Expanded) identifier identifier identifier

Knowledge based response correction method for design of reconfigurable N-shaped microstrip patch antenna using inverse ANNs

AOAD A., ŞİMŞEK M., AYDIN Z.
INTERNATIONAL JOURNAL OF NUMERICAL MODELLING-ELECTRONIC NETWORKS DEVICES AND FIELDS , cilt.30, 2017 (SCI-Expanded) identifier identifier

BAUM-2: a multilingual audio-visual affective face database

Erdem C. E., TURAN Ç., AYDIN Z.
MULTIMEDIA TOOLS AND APPLICATIONS , cilt.74, sa.18, ss.7429-7459, 2015 (SCI-Expanded) identifier identifier

Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure

Aydin Z., Singh A., Bilmes J., Noble W. S.
BMC Bioinformatics , cilt.12, 2011 (SCI-Expanded) Creative Commons License identifier identifier

Bayesian models and algorithms for protein β-sheet prediction

Aydin Z., Altunbasak Y., Erdogan H.
IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.8, sa.2, ss.395-409, 2011 (SCI-Expanded) identifier identifier

Using machine learning to speed up manual image annotation: Application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

Aydin Z., Murray J. I., Waterston R. H., Noble W. S.
BMC Bioinformatics , cilt.11, 2010 (SCI-Expanded) Creative Commons License identifier identifier

Bayesian protein secondary structure prediction with near-optimal segmentations

Aydin Z., Altunbasak Y., Erdogan H.
IEEE Transactions on Signal Processing , cilt.55, sa.7 I, ss.3512-3525, 2007 (SCI-Expanded) identifier

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

Aydin Z., Altunbasak Y., Borodovsky M.
BMC Bioinformatics , cilt.7, 2006 (SCI-Expanded) identifier identifier

A signal processing application in genomic research: Protein secondary structure prediction

Aydin Z., Altunbasak Y.
IEEE Signal Processing Magazine , cilt.23, sa.4, ss.128-131, 2006 (SCI-Expanded) identifier
Diğer Dergilerde Yayınlanan Makaleler

FBSEM: A Novel Feature-Based Stacked Ensemble Method for Sentiment Analysis

Görmez Y., Işık Y. E., Temiz M., Aydın Z.
International Journal of Information Technology and Computer Science , cilt.6, ss.11-22, 2020 (Hakemli Dergi)

YSA KULLANILARAK MAMOGRAMLARDAN DOKUSAL ÖZNİTELİK TABANLI MEME KANSERİ İLGİ BÖLGESİ SINIFLANDIRILMASI

YENGEÇ TAŞDEMİR S. B., Tasdemir K., Aydin Z.
Mühendislik Bilimleri ve Tasarım Dergisi , cilt.8, sa.5, ss.133-141, 2020 (Hakemli Dergi) Creative Commons License identifier

Performance Analysis of Machine Learning and Bioinformatics Applications on High Performance Computing Systems

AYDIN Z.
Academic Platform Journal of Engineering and Science , cilt.8, sa.1, ss.1-14, 2020 (Hakemli Dergi)

New modeling of reconfigurable microstrip antenna using hybrid structure of simulation driven and knowledge based artificial neural networks

Aoad A., AYDIN Z.
PAMUKKALE UNIVERSITY JOURNAL OF ENGINEERING SCIENCES-PAMUKKALE UNIVERSITESI MUHENDISLIK BILIMLERI DERGISI , cilt.26, sa.5, ss.935-943, 2020 (ESCI) Creative Commons License identifier

Classification of Cardiovascular Artery Diseases Using Artificial Neural Network

HACILAR H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.
International Journal of Bioscience, Biochemistry and Bioinformatics , cilt.10, sa.1, ss.34-41, 2020 (Hakemli Dergi)

Intelligent Anomaly Detection Techniques for Denial of Service Attacks

GÜNGÖR V. Ç., AYDIN Z., Karademir R.
International Journal of Computer and Communication Engineering , cilt.7, sa.2, ss.20-31, 2018 (Hakemli Dergi)

Sentiment Analizinde Öznitelik Düşürme Yöntemlerinin Oto Kodlayıcı Derin Öğrenme Makinaları ile Karşılaştırılması

Kaynar O., AYDIN Z., Görmez Y.
International Journal of Informatics Technologies , cilt.10, sa.3, ss.319-326, 2017 (Hakemli Dergi)

Template Scoring Methods for Protein Torsion Angle Prediction

AYDIN Z., Baker D., Noble W. S.
Communications in Computer and Information Science , cilt.574, ss.206-223, 2016 (Scopus)

Design of a Reconfigurable 5-Fingers Shaped Microstrip Patch Antenna by Artificial Neural Networks

Aoad A., Şimşek M., AYDIN Z.
International Journal of Advanced Research in Computer Science and Software Engineering , cilt.4, sa.10, ss.61-70, 2014 (Hakemli Dergi)
Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

A Transfer Learning Approach for Skin Cancer Subtype Detection

Kolukısa B., Görmez Y., Aydın Z.
3rd International Conference on Artificial Intelligence and Applied Mathematics in Engineering. ICAIAME 2021, Antalya, Türkiye, 1 - 03 Ekim 2021, ss.337-347 Creative Commons License Sürdürülebilir Kalkınma

ROSE: A Novel Approach for Protein Secondary Structure Prediction

Görmez Y., Aydın Z.
2nd International Conference on Artificial Intelligence and Applied Mathematics in Engineering (ICAIAME 2020), Antalya, Türkiye, 9 - 11 Ekim 2020, ss.455-464

Data Mining Techniques in Direct Marketing on Imbalanced Data using Tomek Link Combined with Random Under-sampling

Yllmaz Ü., Gezer C., Aydln Z., GÜNGÖR V. Ç.
5th International Conference on Information System and Data Mining, ICISDM 2021, Virtual, Online, Amerika Birleşik Devletleri, 27 - 29 Mayıs 2021, ss.67-73 Sürdürülebilir Kalkınma identifier identifier

Classification of Cardiovascular Artery Diseases based on Deep Neural Network

Hacılar H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.
3rd Int. Conference on Information System and Data Mining (ICISDM 2019), Texas, Amerika Birleşik Devletleri, 6 - 08 Nisan 2019

NSEM: Duygu Analizi için Özgün Yığınlanmış Topluluk Yöntemi(NSEM: Novel Stacked Ensemble Method for Sentiment Analysis)

IŞIK Y. E., GÖRMEZ Y., KAYNAR O., AYDIN Z.
IEEE 2018 International Conference on Artificial Intelligenceand Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018, ss.1-4 identifier

ROI Detection in Mammogram Images using Wavelet-Based Haralick and HOG Features

Tasdemir S. B. Y., TAŞDEMİR K., AYDIN Z.
17th IEEE International Conference on Machine Learning and Applications (IEEE ICMLA), Florida, Amerika Birleşik Devletleri, 17 - 20 Aralık 2018, ss.105-109 Sürdürülebilir Kalkınma identifier

H2O Otomatik Makine Öğrenme Algoritmasının Metabolomik Verilerinde Performansının Araştırılması

ÜNLÜSAVURAN M., ERTÜRK ZARARSIZ G., ZARARSIZ G., İPEKTEN F., KORKMAZ S., GÖKSÜLÜK D., et al.
XX. Ulusal ve III. Uluslararası Biyoistatistik Kongresi, 26 - 29 Ekim 2018

NSEM: Novel Stacked Ensemble Method for Sentiment Analysis

Emre Isik Y., GÖRMEZ Y., KAYNAR O., AYDIN Z.
International Conference on Artificial Intelligence and Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018 identifier

Protein İkincil Yapı Tahmini için NR ve UniClustVeri Tabanlarının Karşılaştırılması (Comparison of NR and UniClust databases for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y.
IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, ss.1-4

Protein İkincil Yapı Tahmini İçin Makine Öğrenmesi Yöntemlerinin Karşılaştırılması (Comparison of machine learning classifiers for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y., IŞIK Y. E.
IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, cilt.1

A Novel Feature Design and Stacking Approach for Non-Technical Electricity Loss Detection

AYDIN Z., GÜNGÖR V. Ç.
2018 IEEE Innovative Smart Grid Technologies - Asia (ISGT Asia), Singapore, Singapur, 22 - 25 Mayıs 2018

Protein Secondary Structure Prediction Using Support Vector Machine and Hierarchical Clustering

ATASEVER S., AYDIN Z., ERBAY H.
WC BIG DATA 2018, KUŞADASI, Türkiye, 28 - 30 Nisan 2018

Ceph-based Storage Server Application

Azginoglu N., Eren M. A., ÇELİK M., AYDIN Z.
6th International Symposium on Digital Forensic and Security (ISDFS), Antalya, Türkiye, 22 - 25 Mart 2018, ss.408-411 identifier

Open Source SLURM Computer Cluster System Design and a Sample Application

Azgınoğlu N., Atasever U., AYDIN Z., Çelik M., Erbay H.
IEEE International Conference on Computer Science and Engineering, Antalya, Türkiye, 5 - 08 Ekim 2017, ss.403-406

Combining Classifiers for Protein Secondary Structure Prediction

AYDIN Z., Uzut O. G.
9th International Conference on Computational Intelligence and Communication Networks (CICN), Girne, Kıbrıs (Kktc), 16 - 17 Eylül 2017, ss.29-33 Sürdürülebilir Kalkınma identifier

Feature Selection for Protein Dihedral Angle Prediction

AYDIN Z., KAYNAR O., GÖRMEZ Y.
9th International Conference on Computational Intelligence and Communication Networks (CICN), Girne, Kıbrıs (Kktc), 16 - 17 Eylül 2017, ss.48-52 Sürdürülebilir Kalkınma identifier

Discovering Biomarkers for Early Prognosis of Respiratory Virus Infection

AYDIN Z.
RECOMB/ISCB Conference on Regulatory and Systems Genomics with DREAM Challenges, Amerika Birleşik Devletleri, 6 - 09 Kasım 2016

Identifying Discriminative Scores of HMM-profile Alignments by Feature Selection

AYDIN Z., ERDEM H. E., UZUT Ö. G.
International Symposium on Health Informatics and Bioinformatics, Muğla, Türkiye, 16 - 17 Ekim 2015, ss.1

Development of Knowledge Based Response Correction for a Reconfigurable N-Shaped Microstrip Antenna Design

Aoad A., Şimşek M., AYDIN Z.
IEEE MTT-S International Conference on Numerical Electromagnetic and Multiphysics Modeling and Optimization, Ottawa, Kanada, 11 - 14 Ağustos 2015, ss.1-3

Short Term Electricity Load Forecasting: A Case Study of Electric Utility Market in Turkey

YASİN M., GÖZE T., ÖZCAN İ., GÜNGÖR V. Ç., AYDIN Z.
International Istanbul Smart Grid Congress And Exhibition, İstanbul, Türkiye, 29 - 30 Nisan 2015, ss.1-5

Template Scoring Methods for Protein Torsion Angle Prediction

AYDIN Z., Baker D., Noble W. S.
8th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC), Lisbon, Portekiz, 12 - 15 Ocak 2015, cilt.574, ss.206-223 identifier

Constructing structural profiles for protein torsion angle prediction

AYDIN Z., BAKER D., NOBLE W. S.
Bioinformatics, Lizbon, Portekiz, 12 - 15 Ocak 2015, ss.26-35

Design of a tri band 5-fingers shaped microstrip patch antenna with an adjustable resistor

Aoad A., AYDIN Z., Korkmaz E.
IEEE International Conference on Antenna Measurements and Applications, Antibes Juan-Les-Pins, Fransa, 16 - 19 Ekim 2014, ss.1-4

A method for extraction of affective audio-visual facial clips from movies

Turan Ç., Kansın C., Zhalehpour S., AYDIN Z., EROĞLU ERDEM Ç.
IEEE Signal Processing and Applications Conference, Türkiye, 24 - 26 Nisan 2013

Protein torsion angle class prediction by a hybrid architecture of Bayesian and neural networks

AYDIN Z., Thompson J., Bilmes J., Baker D., Noble W. S.
International Conference on Bioinformatics and Computational Biology, 16 - 19 Temmuz 2012

Protein function prediction with amino acid sequence and secondary structure alignment scores

AYGÜN E., KÖMÜRLÜ C., AYDIN Z., ÇATALTEPE Z.
International Symposium on Health Informatics and Bioinformatics (HIBIT), 18 - 20 Mayıs 2008

Training set reduction methods for protein secondary structure prediction in single-sequence condition

AYDIN Z., ALTUNBAŞAK Y., PAKATÇI İ. K., ERDOĞAN H.
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS’xx07), 23 - 26 Ağustos 2007

Yetim proteinlerde ikincil yapı öngörüsü için eğitim kümesi indirgeme yöntemleri

PAKATÇI İ. K., AYDIN Z., ERDOĞAN H., ALTUNBAŞAK Y.
IEEE Signal Processing and Communication Applications Conference (SIU), Türkiye, 11 - 13 Haziran 2007

Protein fold recognition using residue-based alignments of sequence and secondary structure

AYDIN Z., ERDOĞAN H., ALTUNBAŞAK Y.
IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 15 - 20 Nisan 2007

A modified stack decoder for protein secondary structure prediction

AYDIN Z., AKGÜN T., ALTUNBAŞAK Y.
IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 19 - 23 Mart 2005

Protein secondary structure prediction with semi Markov HMMs

AYDIN Z., ALTUNBAŞAK Y., BORODOVSKY M.
26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1 - 05 Eylül 2004

A new approach to time-frequency localized signal design

ÖZDEMİR A. K., AYDIN Z., ARIKAN O.
IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 13 - 17 Mayıs 2002
Kitap & Kitap Bölümleri

Digitalization in Smart City Solutions, The Traffic Flow Prediction in New York City, U.S.A.

Ayten A. M., Aydın Z., Görmez Y.
Architectural Sciences and Recent Approaches and Trends in Urban and Regional Planning, Kübra Cihangir Çamur,Şirin Gülcan Eren, Editör, İksad Yayınevi, Ankara, ss.119-151, 2023
Metrikler

Yayın

73

Atıf (WoS)

28

H-İndeks (WoS)

3

Atıf (Scopus)

197

H-İndeks (Scopus)

7

Atıf (Diğer Toplam)

1

Proje

4

Açık Erişim

11
BM Sürdürülebilir Kalkınma Amaçları