Doç. Dr. ZAFER AYDIN

Yayın Ağı

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler 31

1. Network intrusion detection based on machine learning strategies: performance comparisons on imbalanced wired, wireless, and software-defined networking (SDN) network traﬀics

Hacılar H., Aydin Z., Gungor V. C.

Turkish Journal of Electrical Engineering and Computer Sciences , cilt.32, sa.4, ss.623-640, 2024 (SCI-Expanded)

2. Improved classification of colorectal polyps on histopathological images with ensemble learning and stain normalization

Yengec-Tasdemir S. B., AYDIN Z., Akay E., Dogan S., YILMAZ B.

Computer Methods and Programs in Biomedicine , cilt.232, 2023 (SCI-Expanded)

3. IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility

GÖRMEZ Y., AYDIN Z.

IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.20, sa.2, ss.1104-1113, 2023 (SCI-Expanded)

4. Comparative analysis of machine learning approaches for predicting respiratory virus infection and symptom severity

IŞIK Y. E., AYDIN Z.

PeerJ , cilt.11, 2023 (SCI-Expanded)

5. Camera-based wildfire smoke detection for foggy environments

Tas M., Tas Y., Balki O., AYDIN Z., TAŞDEMİR K.

JOURNAL OF ELECTRONIC IMAGING , cilt.31, sa.5, 2022 (SCI-Expanded)

6. Clinical and molecular evaluation of MEFV gene variants in the Turkish population: a study by the National Genetics Consortium

DÜNDAR M., FAHRİOGLU U., Yildiz S. H., Bakir-Gungor B., TEMEL Ş. G., AKIN H., et al.

FUNCTIONAL & INTEGRATIVE GENOMICS , cilt.22, sa.3, ss.291-315, 2022 (SCI-Expanded)

7. The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behcet's Disease

IŞIK Y. E., GÖRMEZ Y., AYDIN Z., Bakir-Gungor B.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , cilt.19, sa.3, ss.1909-1918, 2022 (SCI-Expanded)

8. A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization

Yan Y., Schaffter T., Bergquist T., Yu T., Prosser J., AYDIN Z., et al.

JAMA NETWORK OPEN , cilt.4, sa.10, 2021 (SCI-Expanded)

9. IGPRED: Combination of convolutional neural and graph convolutional networks for protein secondary structure prediction

GÖRMEZ Y., Sabzekar M., AYDIN Z.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.89, sa.10, ss.1277-1288, 2021 (SCI-Expanded)

10. A noise-aware feature selection approach for classification

Sabzekar M., AYDIN Z.

SOFT COMPUTING , cilt.25, sa.8, ss.6391-6400, 2021 (SCI-Expanded)

11. Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge

Sieberts S. K., Schaff J., Duda M., Pataki B. A., Sun M., Snyder P., et al.

NPJ DIGITAL MEDICINE , cilt.4, sa.1, 2021 (SCI-Expanded)

12. Effect of interpolation on specular reflections in texture-based automatic colonic polyp detection

Kacmaz R. N., YILMAZ B., AYDIN Z.

INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY , cilt.31, sa.1, ss.327-335, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

13. 3-State Protein Secondary Structure Prediction based on SCOPe Classes

Atasever S., AZGINOĞLU N., Erbay H., AYDIN Z.

BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY , cilt.64, 2021 (SCI-Expanded)

14. A review of mammographic region of interest classification

Yengec Tasdemir S. B., TAŞDEMİR K., AYDIN Z.

WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY , cilt.10, sa.5, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma

15. A deep learning approach with Bayesian optimization and ensemble classifiers for detecting denial of service attacks

Gormez Y., AYDIN Z., Karademir R., GÜNGÖR V. Ç.

INTERNATIONAL JOURNAL OF COMMUNICATION SYSTEMS , cilt.33, sa.11, 2020 (SCI-Expanded)

16. Lung cancer subtype differentiation from positron emission tomography images

AYYILDIZ O., AYDIN Z., YILMAZ B., KARAÇAVUŞ S., Senkaya K., İÇER S., et al.

TURKISH JOURNAL OF ELECTRICAL ENGINEERING AND COMPUTER SCIENCES , cilt.28, sa.1, ss.262-274, 2020 (SCI-Expanded)

17. Structural profile matrices for predicting structural properties of proteins

Azginoglu N., AYDIN Z., ÇELİK M.

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.18, sa.4, 2020 (SCI-Expanded)

18. Metabolic Imaging based Sub-Classification of Lung Cancer

Bicakci M., AYYILDIZ O., AYDIN Z., BAŞTÜRK A., Karacavus S., YILMAZ B.

IEEE Access , cilt.8, ss.218470-218476, 2020 (SCI-Expanded)

19. Sample Reduction Strategies for Protein Secondary Structure Prediction

Atasever S., AYDIN Z., Erbay H., Sabzekar M.

APPLIED SCIENCES-BASEL , cilt.9, sa.20, 2019 (SCI-Expanded)

20. Developing structural profile matrices for protein secondary structure and solvent accessibility prediction

AYDIN Z., AZGINOĞLU N., Bilgin H. I., ÇELİK M.

BIOINFORMATICS , cilt.35, sa.20, ss.4004-4010, 2019 (SCI-Expanded)

21. A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

Fourati S., Taa A., Mahmoudian M., Burkhart J. G., Klen R., Henao R., et al.

NATURE COMMUNICATIONS , cilt.9, 2018 (SCI-Expanded)

22. Dimensionality reduction for protein secondary structure and solvent accesibility prediction

AYDIN Z., KAYNAR O., GÖRMEZ Y.

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.16, sa.5, 2018 (SCI-Expanded)

23. Protein beta-sheet prediction using an efficient dynamic programming algorithm

Sabzekar M., Naghibzadeh M., Eghdami M., AYDIN Z.

COMPUTATIONAL BIOLOGY AND CHEMISTRY , cilt.70, ss.142-155, 2017 (SCI-Expanded)

24. Knowledge based response correction method for design of reconfigurable N-shaped microstrip patch antenna using inverse ANNs

AOAD A., ŞİMŞEK M., AYDIN Z.

INTERNATIONAL JOURNAL OF NUMERICAL MODELLING-ELECTRONIC NETWORKS DEVICES AND FIELDS , cilt.30, 2017 (SCI-Expanded)

25. BAUM-2: a multilingual audio-visual affective face database

Erdem C. E., TURAN Ç., AYDIN Z.

MULTIMEDIA TOOLS AND APPLICATIONS , cilt.74, sa.18, ss.7429-7459, 2015 (SCI-Expanded)

26. Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure

Aydin Z., Singh A., Bilmes J., Noble W. S.

BMC Bioinformatics , cilt.12, 2011 (SCI-Expanded)

27. Bayesian models and algorithms for protein β-sheet prediction

Aydin Z., Altunbasak Y., Erdogan H.

IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.8, sa.2, ss.395-409, 2011 (SCI-Expanded)

28. Using machine learning to speed up manual image annotation: Application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

Aydin Z., Murray J. I., Waterston R. H., Noble W. S.

BMC Bioinformatics , cilt.11, 2010 (SCI-Expanded)

29. Bayesian protein secondary structure prediction with near-optimal segmentations

Aydin Z., Altunbasak Y., Erdogan H.

IEEE Transactions on Signal Processing , cilt.55, sa.7 I, ss.3512-3525, 2007 (SCI-Expanded)

30. Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

Aydin Z., Altunbasak Y., Borodovsky M.

BMC Bioinformatics , cilt.7, 2006 (SCI-Expanded)

31. A signal processing application in genomic research: Protein secondary structure prediction

Aydin Z., Altunbasak Y.

IEEE Signal Processing Magazine , cilt.23, sa.4, ss.128-131, 2006 (SCI-Expanded)

Diğer Dergilerde Yayınlanan Makaleler 9

1. FBSEM: A Novel Feature-Based Stacked Ensemble Method for Sentiment Analysis

Görmez Y., Işık Y. E., Temiz M., Aydın Z.

International Journal of Information Technology and Computer Science , cilt.6, ss.11-22, 2020 (Hakemli Dergi)

2. YSA KULLANILARAK MAMOGRAMLARDAN DOKUSAL ÖZNİTELİK TABANLI MEME KANSERİ İLGİ BÖLGESİ SINIFLANDIRILMASI

YENGEÇ TAŞDEMİR S. B., Tasdemir K., Aydin Z.

Mühendislik Bilimleri ve Tasarım Dergisi , cilt.8, sa.5, ss.133-141, 2020 (Hakemli Dergi)

3. Performance Analysis of Machine Learning and Bioinformatics Applications on High Performance Computing Systems

AYDIN Z.

Academic Platform Journal of Engineering and Science , cilt.8, sa.1, ss.1-14, 2020 (Hakemli Dergi)

4. New modeling of reconfigurable microstrip antenna using hybrid structure of simulation driven and knowledge based artificial neural networks

Aoad A., AYDIN Z.

PAMUKKALE UNIVERSITY JOURNAL OF ENGINEERING SCIENCES-PAMUKKALE UNIVERSITESI MUHENDISLIK BILIMLERI DERGISI , cilt.26, sa.5, ss.935-943, 2020 (ESCI)

5. Classification of Cardiovascular Artery Diseases Using Artificial Neural Network

HACILAR H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.

International Journal of Bioscience, Biochemistry and Bioinformatics , cilt.10, sa.1, ss.34-41, 2020 (Hakemli Dergi)

6. Intelligent Anomaly Detection Techniques for Denial of Service Attacks

GÜNGÖR V. Ç., AYDIN Z., Karademir R.

International Journal of Computer and Communication Engineering , cilt.7, sa.2, ss.20-31, 2018 (Hakemli Dergi)

7. Sentiment Analizinde Öznitelik Düşürme Yöntemlerinin Oto Kodlayıcı Derin Öğrenme Makinaları ile Karşılaştırılması

Kaynar O., AYDIN Z., Görmez Y.

International Journal of Informatics Technologies , cilt.10, sa.3, ss.319-326, 2017 (Hakemli Dergi)

8. Template Scoring Methods for Protein Torsion Angle Prediction

AYDIN Z., Baker D., Noble W. S.

Communications in Computer and Information Science , cilt.574, ss.206-223, 2016 (Scopus)

9. Design of a Reconfigurable 5-Fingers Shaped Microstrip Patch Antenna by Artificial Neural Networks

Aoad A., Şimşek M., AYDIN Z.

International Journal of Advanced Research in Computer Science and Software Engineering , cilt.4, sa.10, ss.61-70, 2014 (Hakemli Dergi)

Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 32

1. A Transfer Learning Approach for Skin Cancer Subtype Detection

Kolukısa B., Görmez Y., Aydın Z.

3rd International Conference on Artificial Intelligence and Applied Mathematics in Engineering. ICAIAME 2021, Antalya, Türkiye, 1 - 03 Ekim 2021, ss.337-347

2. ROSE: A Novel Approach for Protein Secondary Structure Prediction

Görmez Y., Aydın Z.

2nd International Conference on Artificial Intelligence and Applied Mathematics in Engineering (ICAIAME 2020), Antalya, Türkiye, 9 - 11 Ekim 2020, ss.455-464

3. Data Mining Techniques in Direct Marketing on Imbalanced Data using Tomek Link Combined with Random Under-sampling

Yllmaz Ü., Gezer C., Aydln Z., GÜNGÖR V. Ç.

5th International Conference on Information System and Data Mining, ICISDM 2021, Virtual, Online, Amerika Birleşik Devletleri, 27 - 29 Mayıs 2021, ss.67-73 Sürdürülebilir Kalkınma

4. Classification of Cardiovascular Artery Diseases based on Deep Neural Network

Hacılar H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.

3rd Int. Conference on Information System and Data Mining (ICISDM 2019), Texas, Amerika Birleşik Devletleri, 6 - 08 Nisan 2019

5. NSEM: Duygu Analizi için Özgün Yığınlanmış Topluluk Yöntemi(NSEM: Novel Stacked Ensemble Method for Sentiment Analysis)

IŞIK Y. E., GÖRMEZ Y., KAYNAR O., AYDIN Z.

IEEE 2018 International Conference on Artificial Intelligenceand Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018, ss.1-4

6. ROI Detection in Mammogram Images using Wavelet-Based Haralick and HOG Features

Tasdemir S. B. Y., TAŞDEMİR K., AYDIN Z.

17th IEEE International Conference on Machine Learning and Applications (IEEE ICMLA), Florida, Amerika Birleşik Devletleri, 17 - 20 Aralık 2018, ss.105-109 Sürdürülebilir Kalkınma

7. H2O Otomatik Makine Öğrenme Algoritmasının Metabolomik Verilerinde Performansının Araştırılması

ÜNLÜSAVURAN M., ERTÜRK ZARARSIZ G., ZARARSIZ G., İPEKTEN F., KORKMAZ S., GÖKSÜLÜK D., et al.

XX. Ulusal ve III. Uluslararası Biyoistatistik Kongresi, 26 - 29 Ekim 2018

8. NSEM: Novel Stacked Ensemble Method for Sentiment Analysis

Emre Isik Y., GÖRMEZ Y., KAYNAR O., AYDIN Z.

International Conference on Artificial Intelligence and Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018

9. Protein İkincil Yapı Tahmini için NR ve UniClustVeri Tabanlarının Karşılaştırılması (Comparison of NR and UniClust databases for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y.

IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, ss.1-4

10. Protein İkincil Yapı Tahmini İçin Makine Öğrenmesi Yöntemlerinin Karşılaştırılması (Comparison of machine learning classifiers for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y., IŞIK Y. E.

IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, cilt.1

Kitaplar 1

1. Digitalization in Smart City Solutions, The Traffic Flow Prediction in New York City, U.S.A.

Ayten A. M., Aydın Z., Görmez Y.

Architectural Sciences and Recent Approaches and Trends in Urban and Regional Planning, Kübra Cihangir Çamur,Şirin Gülcan Eren, Editör, İksad Yayınevi, Ankara, ss.119-151, 2023

Metrikler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

197

H-İndeks (Scopus)

Atıf (Diğer Toplam)

Proje

BM Sürdürülebilir Kalkınma Amaçları

Yayınlar & Eserler