Yayınlar & Eserler

Yayın Ağı
SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler 9

1. NeRNA: A negative data generation framework for machine learning applications of noncoding RNAs

Orhan M. E., DEMİRCİ Y. M., SAÇAR DEMİRCİ M. D.
Computers in Biology and Medicine , cilt.159, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

2. Computational prediction of microRNAs in Histoplasma capsulatum

SAÇAR DEMİRCİ M. D.
MICROBIAL PATHOGENESIS , cilt.148, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

3. Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection

SAÇAR DEMİRCİ M. D., ADAN A.
PEERJ , cilt.8, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

4. MicroRNA prediction based on 3D graphical representation of RNA secondary structures

SAÇAR DEMİRCİ M. D.
TURKISH JOURNAL OF BIOLOGY , cilt.43, sa.4, ss.274-286, 2019 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

5. The Expressed MicroRNA-mRNA Interactions of Toxoplasma gondii

Acar I. E., SAÇAR DEMİRCİ M. D., Gross U., Allmer J.
FRONTIERS IN MICROBIOLOGY , cilt.8, 2018 (SCI-Expanded) Creative Commons License identifier identifier identifier

6. On the performance of pre-microRNA detection algorithms

SAÇAR DEMİRCİ M. D., Baumbach J., Allmer J.
NATURE COMMUNICATIONS , cilt.8, 2017 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

7. Delineating the impact of machine learning elements in pre-microRNA detection

SAÇAR DEMİRCİ M. D., Allmer J.
PEERJ , cilt.5, 2017 (SCI-Expanded) identifier identifier identifier

8. The impact of feature selection on one and two-class classification performance for plant microRNAs

Khalifa W., Yousef M., SAÇAR DEMİRCİ M. D., Allmer J.
PEERJ , cilt.4, 2016 (SCI-Expanded) identifier identifier identifier

9. Machine Learning Methods for MicroRNA Gene Prediction

Sacar M. D., Allmer J.
MIRNOMICS: MICRORNA BIOLOGY AND COMPUTATIONAL ANALYSIS , cilt.1107, ss.177-187, 2014 (SCI-Expanded) Creative Commons License identifier identifier identifier
Diğer Dergilerde Yayınlanan Makaleler 7

1. Circular RNA-MicroRNA-MRNA interaction predictions in SARS-CoV-2 infection

DEMİRCİ Y. M., SAÇAR DEMİRCİ M. D.
JOURNAL OF INTEGRATIVE BIOINFORMATICS , cilt.18, sa.1, ss.45-50, 2021 (ESCI) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

2. COMPUTATIONAL IDENTIFICATION OF MICRORNAS FROM SSDNA VIRUSES

SAÇAR DEMİRCİ M. D.
Eskişehir Technical University Journal of Science and Technology A - Applied Sciences and Engineering , cilt.19, sa.3, ss.565-573, 2018 (Hakemli Dergi) Creative Commons License

3. Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection

SAÇAR DEMİRCİ M. D., Allmer J.
JOURNAL OF INTEGRATIVE BIOINFORMATICS , cilt.14, sa.2, 2017 (ESCI) Sürdürülebilir Kalkınma identifier identifier identifier

4. A Machine Learning Approach for MicroRNA Precursor Prediction in Retro transcribing Virus Genomes

SAÇAR DEMİRCİ M. D., TOPRAK M., ALLMER J.
Journal of Integrative Bioinformatics , cilt.13, sa.5, 2016 (Scopus)

5. Feature Selection Has a Large Impact on One Class Classification Accuracy for MicroRNAs in Plants

YOUSEF M., SAÇAR DEMİRCİ M. D., KHALIFA W., ALLMER J.
Advances in Bioinformatics , cilt.2016, ss.1-6, 2016 (Scopus) Creative Commons License

6. Computational Prediction of MicroRNAs from Toxoplasma gondii Potentially Regulating the Hosts Gene Expression

SAÇAR M. D., BAĞCI C., ALLMER J.
GENOMICS PROTEOMICS BIOINFORMATICS , cilt.12, sa.5, ss.228-238, 2014 (Scopus)

7. Can MiRBase Provide Positive Data for Machine Learning for the Detection of MiRNA Hairpins

SAÇAR M. D., Hamzeiy H., ALLMER J.
Journal of Integrative Bioinformatics , cilt.10, sa.2, 2013 (Scopus)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 8

1. MiRNomics: miRNA biyolojisi ve bilişimsel analizi

SAÇAR DEMİRCİ M. D.
V. Yaşam Bilimleri Kongresi, Kayseri, Türkiye, 21 - 22 Şubat 2020

2. Challenges of Big Data in Machine Learning Based MicroRNA Analysis

SAÇAR DEMİRCİ M. D.
12. Tıp Bilişimi Kongresi, Ankara, Türkiye, 15 - 16 Kasım 2019

3. MicroRNAs: small regulators of gene expression

SAÇAR DEMİRCİ M. D.
64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS) - Medical Omics Workshop, Dortmund, Almanya, 8 - 11 Eylül 2019

4. Analyzing potential targets of viral microRNAs in human

SAÇAR DEMİRCİ M. D.
The International Symposium on Health Informatics and Bioinformatics, (HIBIT 2018), Antalya, Türkiye, 25 - 27 Ekim 2018

5. izMiR 2.0: an enhanced version of consensus miRNA prediction method

SAÇAR DEMİRCİ M. D., ALLMER J.
The International Symposium on Health Informatics and Bioinformatics, (HIBIT 2018), Antalya, Türkiye, 25 - 27 Ekim 2018

6. A Machine Learning Approach for MicroRNA Precursor Prediction in Retro transcribing Virus Genomes

SAÇAR DEMİRCİ M. D., TOPRAK M., ALLMER J.
International Symposium on Integrative Bioinformatics 2016, Bielefeld, Almanya, 21 - 23 Eylül 2016

7. Data mining for microrna gene prediction On the impact of class imbalance and feature number for microrna gene prediction

SAÇAR M. D., ALLMER J.
2013 8th International Symposium on Health Informatics and Bioinformatics, Ankara, Turkey, Türkiye, 25 - 27 Eylül 2013 Creative Commons License

8. Comparison of Four Ab Initio MicroRNA Prediction Tools

ALLMER J., SAÇAR M. D.
Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11 - 14 Şubat 2013 Creative Commons License identifier
Kitaplar 4

1. Bioinformatics Tools to Study the Role of miRNAs

Orhan M. E., Demirci Y. M., Saçar Demirci M. D.
miRNAs, Human Health and Diseases, Luis M. Vaschetto, Editör, Springer Nature, Zug, ss.41-60, 2024

2. Computational Detection of Pre-microRNAs

Saçar Demirci M. D.
miRNomics MicroRNA Biology and Computational Analysis, Jens Allmer,Malik Yousef, Editör, Humana Press, Inc. , New York, ss.167-174, 2022

3. Computational Prediction of Functional MicroRNA–mRNA Interactions

SAÇAR DEMİRCİ M. D., Yousef M., ALLMER J.
Computational Biology of Non-Coding RNA, Lai Xin, Gupta Shailendra K., Vera Julio, Editör, Humana Press, New York, ss.175-196, 2019

4. Differential Expression of Toxoplasma gondii MicroRNAs in Murine and Human Hosts

SAÇAR DEMİRCİ M. D., Bağcı C., ALLMER J.
Non coding RNAs and Inter kingdom Communication, Leitão Ana Lúcia, Enguita Francisco J., Editör, Springer International Publishing, ss.143-159, 2016
Metrikler

Yayın

28

Yayın (WoS)

11

Yayın (Scopus)

11

Atıf (WoS)

231

H-İndeks (WoS)

8

Atıf (Scopus)

243

H-İndeks (Scopus)

7

Proje

2
BM Sürdürülebilir Kalkınma Amaçları