Doç. Dr. ZAFER AYDIN


Mühendislik Fakültesi, Bilgisayar Mühendisliği

Bilgisayar Yazılımı


WoS Araştırma Alanları: Mühendislik, Bilişim ve Teknoloji (ENG), Bilgisayar Bilimi, BİLGİSAYAR BİLİMİ, YAPAY ZEKA, BİLGİSAYAR BİLİMİ, BİLGİ SİSTEMLERİ


Avesis Araştırma Alanları: Bilgisayar Bilimleri, Biyoenformatik, Yapay Zeka, Bilgisayarda Öğrenme ve Örüntü Tanıma, Mühendislik ve Teknoloji


Yayınlardaki İsimler: Aydin Zafer

E-posta: zafer.aydin@agu.edu.tr
İş Telefonu: +90 352 224 8800 Dahili: 7256
Web: http://people.agu.edu.tr/zaferaydin
Ofis: BA118
Posta Adresi: Barbaros Mahallesi Erkilet Bulvarı Sümer Kampüsü BA118 38080 Kocasinan Kayseri

Metrikler

Yayın

73

Atıf (WoS)

28

H-İndeks (WoS)

3

Atıf (Scopus)

197

H-İndeks (Scopus)

7

Atıf (Diğer Toplam)

1

Proje

4
BM Sürdürülebilir Kalkınma Amaçları

Eğitim Bilgileri

2002 - 2008

2002 - 2008

Doktora

Georgia Institute of Technology, Mühendislik Fakültesi, Elektrik Ve Bilgisayar Mühendisliği, Amerika Birleşik Devletleri

1999 - 2001

1999 - 2001

Yüksek Lisans

Bilkent Üniversitesi, Mühendislik Fakültesi, Elektrik Ve Elektronik Mühendisliği, Türkiye

1995 - 1999

1995 - 1999

Lisans

Bilkent Üniversitesi, Mühendislik Fakültesi, Elektrik Ve Elektronik Mühendisliği, Türkiye

Yaptığı Tezler

2008

2008

Doktora

Bayesian Models and Algorithms for Protein Beta-Sheet Prediction

Georgia Institute Of Technology, Mühendislik Fakültesi, Elektrik Ve Bilgisayar Mühendisliği

2001

2001

Yüksek Lisans

A Novel Approach for Time-Frequency Localized Signal Design

Bilkent Üniversitesi, Mühendislik Fakültesi, Elektrik Ve Elektronik Mühendisliği

Yabancı Diller

C1 İleri

C1 İleri

İngilizce

Araştırma Alanları

Bilgisayar Bilimleri

Biyoenformatik

Yapay Zeka, Bilgisayarda Öğrenme ve Örüntü Tanıma

Mühendislik ve Teknoloji

Akademik Unvanlar / Görevler

2020 - Devam Ediyor

2020 - Devam Ediyor

Doç.Dr.

Abdullah Gül Üniversitesi, Mühendislik Fakültesi, Bilgisayar Mühendisliği

2014 - 2020

2014 - 2020

Dr.Öğr.Üyesi

Abdullah Gül Üniversitesi, Mühendislik Fakültesi, Bilgisayar Mühendisliği

Verdiği Dersler

Yüksek Lisans

Yüksek Lisans

Machine Learning

Data Mining

Lisans

Lisans

Analysis of Algorithms

Algorithms

Object Oriented Programming

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

2023

2023

IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility

GÖRMEZ Y., AYDIN Z.

IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.20, sa.2, ss.1104-1113, 2023 (SCI-Expanded) identifier identifier

2022

2022

Camera-based wildfire smoke detection for foggy environments

Tas M., Tas Y., Balki O., AYDIN Z., TAŞDEMİR K.

JOURNAL OF ELECTRONIC IMAGING , cilt.31, sa.5, 2022 (SCI-Expanded) identifier

2022

2022

The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behcet's Disease

IŞIK Y. E., GÖRMEZ Y., AYDIN Z., Bakir-Gungor B.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , cilt.19, sa.3, ss.1909-1918, 2022 (SCI-Expanded) identifier identifier identifier

2021

2021

IGPRED: Combination of convolutional neural and graph convolutional networks for protein secondary structure prediction

GÖRMEZ Y., Sabzekar M., AYDIN Z.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.89, sa.10, ss.1277-1288, 2021 (SCI-Expanded) identifier identifier identifier

2021

2021

A noise-aware feature selection approach for classification

Sabzekar M., AYDIN Z.

SOFT COMPUTING , cilt.25, sa.8, ss.6391-6400, 2021 (SCI-Expanded) identifier identifier

2021

2021

Effect of interpolation on specular reflections in texture-based automatic colonic polyp detection

Kacmaz R. N., YILMAZ B., AYDIN Z.

INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY , cilt.31, sa.1, ss.327-335, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

2021

2021

3-State Protein Secondary Structure Prediction based on SCOPe Classes

Atasever S., AZGINOĞLU N., Erbay H., AYDIN Z.

BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY , cilt.64, 2021 (SCI-Expanded) Creative Commons License identifier identifier

2020

2020

A review of mammographic region of interest classification

Yengec Tasdemir S. B., TAŞDEMİR K., AYDIN Z.

WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY , cilt.10, sa.5, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier

2020

2020

Lung cancer subtype differentiation from positron emission tomography images

AYYILDIZ O., AYDIN Z., YILMAZ B., KARAÇAVUŞ S., Senkaya K., İÇER S., et al.

TURKISH JOURNAL OF ELECTRICAL ENGINEERING AND COMPUTER SCIENCES , cilt.28, sa.1, ss.262-274, 2020 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier

2020

2020

Structural profile matrices for predicting structural properties of proteins

Azginoglu N., AYDIN Z., ÇELİK M.

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.18, sa.4, 2020 (SCI-Expanded) identifier identifier identifier

2018

2018

Dimensionality reduction for protein secondary structure and solvent accesibility prediction

AYDIN Z., KAYNAR O., GÖRMEZ Y.

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY , cilt.16, sa.5, 2018 (SCI-Expanded) identifier

2017

2017

Protein beta-sheet prediction using an efficient dynamic programming algorithm

Sabzekar M., Naghibzadeh M., Eghdami M., AYDIN Z.

COMPUTATIONAL BIOLOGY AND CHEMISTRY , cilt.70, ss.142-155, 2017 (SCI-Expanded) identifier identifier identifier

2017

2017

Knowledge based response correction method for design of reconfigurable N-shaped microstrip patch antenna using inverse ANNs

AOAD A., ŞİMŞEK M., AYDIN Z.

INTERNATIONAL JOURNAL OF NUMERICAL MODELLING-ELECTRONIC NETWORKS DEVICES AND FIELDS , cilt.30, 2017 (SCI-Expanded) identifier identifier

2015

2015

BAUM-2: a multilingual audio-visual affective face database

Erdem C. E., TURAN Ç., AYDIN Z.

MULTIMEDIA TOOLS AND APPLICATIONS , cilt.74, sa.18, ss.7429-7459, 2015 (SCI-Expanded) identifier identifier

2011

2011

Bayesian models and algorithms for protein β-sheet prediction

Aydin Z., Altunbasak Y., Erdogan H.

IEEE/ACM Transactions on Computational Biology and Bioinformatics , cilt.8, sa.2, ss.395-409, 2011 (SCI-Expanded) identifier identifier

2007

2007

Bayesian protein secondary structure prediction with near-optimal segmentations

Aydin Z., Altunbasak Y., Erdogan H.

IEEE Transactions on Signal Processing , cilt.55, sa.7 I, ss.3512-3525, 2007 (SCI-Expanded) identifier

2006

2006

A signal processing application in genomic research: Protein secondary structure prediction

Aydin Z., Altunbasak Y.

IEEE Signal Processing Magazine , cilt.23, sa.4, ss.128-131, 2006 (SCI-Expanded) identifier

Diğer Dergilerde Yayınlanan Makaleler

2020

2020

FBSEM: A Novel Feature-Based Stacked Ensemble Method for Sentiment Analysis

Görmez Y., Işık Y. E., Temiz M., Aydın Z.

International Journal of Information Technology and Computer Science , cilt.6, ss.11-22, 2020 (Hakemli Dergi)

2020

2020

Performance Analysis of Machine Learning and Bioinformatics Applications on High Performance Computing Systems

AYDIN Z.

Academic Platform Journal of Engineering and Science , cilt.8, sa.1, ss.1-14, 2020 (Hakemli Dergi)

2020

2020

New modeling of reconfigurable microstrip antenna using hybrid structure of simulation driven and knowledge based artificial neural networks

Aoad A., AYDIN Z.

PAMUKKALE UNIVERSITY JOURNAL OF ENGINEERING SCIENCES-PAMUKKALE UNIVERSITESI MUHENDISLIK BILIMLERI DERGISI , cilt.26, sa.5, ss.935-943, 2020 (ESCI) Creative Commons License identifier

2020

2020

Classification of Cardiovascular Artery Diseases Using Artificial Neural Network

HACILAR H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.

International Journal of Bioscience, Biochemistry and Bioinformatics , cilt.10, sa.1, ss.34-41, 2020 (Hakemli Dergi)

2018

2018

Intelligent Anomaly Detection Techniques for Denial of Service Attacks

GÜNGÖR V. Ç., AYDIN Z., Karademir R.

International Journal of Computer and Communication Engineering , cilt.7, sa.2, ss.20-31, 2018 (Hakemli Dergi)

2017

2017

Sentiment Analizinde Öznitelik Düşürme Yöntemlerinin Oto Kodlayıcı Derin Öğrenme Makinaları ile Karşılaştırılması

Kaynar O., AYDIN Z., Görmez Y.

International Journal of Informatics Technologies , cilt.10, sa.3, ss.319-326, 2017 (Hakemli Dergi)

2016

2016

Template Scoring Methods for Protein Torsion Angle Prediction

AYDIN Z., Baker D., Noble W. S.

Communications in Computer and Information Science , cilt.574, ss.206-223, 2016 (Scopus)

2014

2014

Design of a Reconfigurable 5-Fingers Shaped Microstrip Patch Antenna by Artificial Neural Networks

Aoad A., Şimşek M., AYDIN Z.

International Journal of Advanced Research in Computer Science and Software Engineering , cilt.4, sa.10, ss.61-70, 2014 (Hakemli Dergi)

Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler

2021

2021

A Transfer Learning Approach for Skin Cancer Subtype Detection

Kolukısa B., Görmez Y., Aydın Z.

3rd International Conference on Artificial Intelligence and Applied Mathematics in Engineering. ICAIAME 2021, Antalya, Türkiye, 1 - 03 Ekim 2021, ss.337-347 Creative Commons License Sürdürülebilir Kalkınma

2020

2020

ROSE: A Novel Approach for Protein Secondary Structure Prediction

Görmez Y., Aydın Z.

2nd International Conference on Artificial Intelligence and Applied Mathematics in Engineering (ICAIAME 2020), Antalya, Türkiye, 9 - 11 Ekim 2020, ss.455-464

2021

2021

Data Mining Techniques in Direct Marketing on Imbalanced Data using Tomek Link Combined with Random Under-sampling

Yllmaz Ü., Gezer C., Aydln Z., GÜNGÖR V. Ç.

5th International Conference on Information System and Data Mining, ICISDM 2021, Virtual, Online, Amerika Birleşik Devletleri, 27 - 29 Mayıs 2021, ss.67-73 Sürdürülebilir Kalkınma identifier identifier

2019

2019

Classification of Cardiovascular Artery Diseases based on Deep Neural Network

Hacılar H., GÖRMEZ Y., GÜNGÖR B., Gezer C., AYDIN Z., GÜNGÖR V. Ç.

3rd Int. Conference on Information System and Data Mining (ICISDM 2019), Texas, Amerika Birleşik Devletleri, 6 - 08 Nisan 2019

2018

2018

NSEM: Duygu Analizi için Özgün Yığınlanmış Topluluk Yöntemi(NSEM: Novel Stacked Ensemble Method for Sentiment Analysis)

IŞIK Y. E., GÖRMEZ Y., KAYNAR O., AYDIN Z.

IEEE 2018 International Conference on Artificial Intelligenceand Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018, ss.1-4 identifier

2018

2018

ROI Detection in Mammogram Images using Wavelet-Based Haralick and HOG Features

Tasdemir S. B. Y., TAŞDEMİR K., AYDIN Z.

17th IEEE International Conference on Machine Learning and Applications (IEEE ICMLA), Florida, Amerika Birleşik Devletleri, 17 - 20 Aralık 2018, ss.105-109 Sürdürülebilir Kalkınma identifier

2018

2018

NSEM: Novel Stacked Ensemble Method for Sentiment Analysis

Emre Isik Y., GÖRMEZ Y., KAYNAR O., AYDIN Z.

International Conference on Artificial Intelligence and Data Processing (IDAP), Malatya, Türkiye, 28 - 30 Eylül 2018 identifier

2018

2018

Protein İkincil Yapı Tahmini için NR ve UniClustVeri Tabanlarının Karşılaştırılması (Comparison of NR and UniClust databases for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y.

IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, ss.1-4

2018

2018

Protein İkincil Yapı Tahmini İçin Makine Öğrenmesi Yöntemlerinin Karşılaştırılması (Comparison of machine learning classifiers for protein secondary structure prediction)

AYDIN Z., KAYNAR O., GÖRMEZ Y., IŞIK Y. E.

IEEE Conferences 2018 26th Signal Processing and Communications Applications Conference (SIU), İzmir, Türkiye, 2 - 05 Mayıs 2018, cilt.1

2018

2018

A Novel Feature Design and Stacking Approach for Non-Technical Electricity Loss Detection

AYDIN Z., GÜNGÖR V. Ç.

2018 IEEE Innovative Smart Grid Technologies - Asia (ISGT Asia), Singapore, Singapur, 22 - 25 Mayıs 2018

2018

2018

Ceph-based Storage Server Application

Azginoglu N., Eren M. A., ÇELİK M., AYDIN Z.

6th International Symposium on Digital Forensic and Security (ISDFS), Antalya, Türkiye, 22 - 25 Mart 2018, ss.408-411 identifier

2017

2017

Open Source SLURM Computer Cluster System Design and a Sample Application

Azgınoğlu N., Atasever U., AYDIN Z., Çelik M., Erbay H.

IEEE International Conference on Computer Science and Engineering, Antalya, Türkiye, 5 - 08 Ekim 2017, ss.403-406

2017

2017

Combining Classifiers for Protein Secondary Structure Prediction

AYDIN Z., Uzut O. G.

9th International Conference on Computational Intelligence and Communication Networks (CICN), Girne, Kıbrıs (Kktc), 16 - 17 Eylül 2017, ss.29-33 Sürdürülebilir Kalkınma identifier

2017

2017

Feature Selection for Protein Dihedral Angle Prediction

AYDIN Z., KAYNAR O., GÖRMEZ Y.

9th International Conference on Computational Intelligence and Communication Networks (CICN), Girne, Kıbrıs (Kktc), 16 - 17 Eylül 2017, ss.48-52 Sürdürülebilir Kalkınma identifier

2016

2016

Discovering Biomarkers for Early Prognosis of Respiratory Virus Infection

AYDIN Z.

RECOMB/ISCB Conference on Regulatory and Systems Genomics with DREAM Challenges, Amerika Birleşik Devletleri, 6 - 09 Kasım 2016

2015

2015

Identifying Discriminative Scores of HMM-profile Alignments by Feature Selection

AYDIN Z., ERDEM H. E., UZUT Ö. G.

International Symposium on Health Informatics and Bioinformatics, Muğla, Türkiye, 16 - 17 Ekim 2015, ss.1

2015

2015

Development of Knowledge Based Response Correction for a Reconfigurable N-Shaped Microstrip Antenna Design

Aoad A., Şimşek M., AYDIN Z.

IEEE MTT-S International Conference on Numerical Electromagnetic and Multiphysics Modeling and Optimization, Ottawa, Kanada, 11 - 14 Ağustos 2015, ss.1-3

2015

2015

Short Term Electricity Load Forecasting: A Case Study of Electric Utility Market in Turkey

YASİN M., GÖZE T., ÖZCAN İ., GÜNGÖR V. Ç., AYDIN Z.

International Istanbul Smart Grid Congress And Exhibition, İstanbul, Türkiye, 29 - 30 Nisan 2015, ss.1-5

2015

2015

Template Scoring Methods for Protein Torsion Angle Prediction

AYDIN Z., Baker D., Noble W. S.

8th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC), Lisbon, Portekiz, 12 - 15 Ocak 2015, cilt.574, ss.206-223 identifier

2015

2015

Constructing structural profiles for protein torsion angle prediction

AYDIN Z., BAKER D., NOBLE W. S.

Bioinformatics, Lizbon, Portekiz, 12 - 15 Ocak 2015, ss.26-35

2014

2014

Design of a tri band 5-fingers shaped microstrip patch antenna with an adjustable resistor

Aoad A., AYDIN Z., Korkmaz E.

IEEE International Conference on Antenna Measurements and Applications, Antibes Juan-Les-Pins, Fransa, 16 - 19 Ekim 2014, ss.1-4

2013

2013

A method for extraction of affective audio-visual facial clips from movies

Turan Ç., Kansın C., Zhalehpour S., AYDIN Z., EROĞLU ERDEM Ç.

IEEE Signal Processing and Applications Conference, Türkiye, 24 - 26 Nisan 2013

2012

2012

Protein torsion angle class prediction by a hybrid architecture of Bayesian and neural networks

AYDIN Z., Thompson J., Bilmes J., Baker D., Noble W. S.

International Conference on Bioinformatics and Computational Biology, 16 - 19 Temmuz 2012

2008

2008

Protein function prediction with amino acid sequence and secondary structure alignment scores

AYGÜN E., KÖMÜRLÜ C., AYDIN Z., ÇATALTEPE Z.

International Symposium on Health Informatics and Bioinformatics (HIBIT), 18 - 20 Mayıs 2008

2007

2007

Training set reduction methods for protein secondary structure prediction in single-sequence condition

AYDIN Z., ALTUNBAŞAK Y., PAKATÇI İ. K., ERDOĞAN H.

29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS’xx07), 23 - 26 Ağustos 2007

2007

2007

Yetim proteinlerde ikincil yapı öngörüsü için eğitim kümesi indirgeme yöntemleri

PAKATÇI İ. K., AYDIN Z., ERDOĞAN H., ALTUNBAŞAK Y.

IEEE Signal Processing and Communication Applications Conference (SIU), Türkiye, 11 - 13 Haziran 2007

2007

2007

Protein fold recognition using residue-based alignments of sequence and secondary structure

AYDIN Z., ERDOĞAN H., ALTUNBAŞAK Y.

IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 15 - 20 Nisan 2007

2005

2005

A modified stack decoder for protein secondary structure prediction

AYDIN Z., AKGÜN T., ALTUNBAŞAK Y.

IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 19 - 23 Mart 2005

2004

2004

Protein secondary structure prediction with semi Markov HMMs

AYDIN Z., ALTUNBAŞAK Y., BORODOVSKY M.

26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1 - 05 Eylül 2004

2002

2002

A new approach to time-frequency localized signal design

ÖZDEMİR A. K., AYDIN Z., ARIKAN O.

IEEE International Conference on Acoustics Speech and Signal Processing (ICASSP), 13 - 17 Mayıs 2002

Kitaplar

2023

2023

Digitalization in Smart City Solutions, The Traffic Flow Prediction in New York City, U.S.A.

Ayten A. M., Aydın Z., Görmez Y.

Architectural Sciences and Recent Approaches and Trends in Urban and Regional Planning, Kübra Cihangir Çamur,Şirin Gülcan Eren, Editör, İksad Yayınevi, Ankara, ss.119-151, 2023

Bilimsel Dergilerdeki Faaliyetler

2014 - 2015

2014 - 2015

TURKISH JOURNAL OF BIOLOGY

Editör

Bilimsel Yayınlarda Hakemlikler

Ekim 2017

Ekim 2017

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Mayıs 2017

Mayıs 2017

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Mart 2017

Mart 2017

Proceesings of IEEE Signal Processing and Communication Applications Conference

Hakemli Bilimsel Dergi

Mart 2017

Mart 2017

Proceesings of IEEE Signal Processing and Communication Applications Conference

Hakemli Bilimsel Dergi

Mart 2017

Mart 2017

Proceesings of IEEE Signal Processing and Communication Applications Conference

Hakemli Bilimsel Dergi

Ekim 2016

Ekim 2016

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Ekim 2016

Ekim 2016

Academic Platform Journal of Engineering and Science

Diğer Dergiler

Temmuz 2016

Temmuz 2016

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Haziran 2016

Haziran 2016

Turkish Journal of Electrical Engineering and Computer Sciences

SCI Kapsamındaki Dergi

Mayıs 2016

Mayıs 2016

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Ocak 2016

Ocak 2016

Gazi Üniversitesi Mühendislik-Mimarlık Fakültesi Dergisi

Hakemli Bilimsel Dergi

Kasım 2015

Kasım 2015

TURKISH JOURNAL OF ELECTRICAL ENGINEERING & COMPUTER SCIENCES

SCI Kapsamındaki Dergi

Mayıs 2015

Mayıs 2015

Knowledge and Information Systems

SCI Kapsamındaki Dergi

Mart 2015

Mart 2015

TURKISH JOURNAL OF ELECTRICAL ENGINEERING & COMPUTER SCIENCES

SCI Kapsamındaki Dergi



Kongre ve Sempozyum Katılımı Faaliyetleri

01 Şubat 2017 - 01 Şubat 2017

01 Şubat 2017 - 01 Şubat 2017

DARPA Prometheus Program Kickoff

Katılımcı

Virginia-Amerika Birleşik Devletleri

01 Kasım 2016 - 01 Kasım 2016

01 Kasım 2016 - 01 Kasım 2016

RECOMB/ISCB Conference on Regulatory & Systems Genomics with DREAM Challenges & Cytoscape Workshop

Katılımcı

Arizona-Amerika Birleşik Devletleri

Atıflar

Toplam Atıf Sayısı (WOS): 30

h-indeksi (WOS): 3